Morphometric analysis of the phrenic nerve in male and female Wistar-Kyoto (WKY) and spontaneously hypertensive rats (SHR)

Ventilatory differences between rat strains and genders have been described but the morphology of the phrenic nerve has not been investigated in spontaneously hypertensive (SHR) and normotensive Wistar-Kyoto (WKY) rats. A descriptive and morphometric study of the phrenic nerves of male (N = 8) and female (N = 9) SHR, and male (N = 5) and female (N = 6) WKY is presented. After arterial pressure and heart rate recordings, the phrenic nerves of 20-week-old animals were prepared for epoxy resin embedding and light microscopy. Morphometric analysis performed with the aid of computer software that took into consideration the fascicle area and diameter, as well as myelinated fiber profile and Schwann cell nucleus number per area. Phrenic nerves were generally larger in males than in females on both strains but larger in WKY compared to SHR for both genders. Myelinated fiber numbers (male SHR = 228 ± 13; female SHR = 258 ± 4; male WKY = 382 ± 23; female WKY = 442 ± 11 for proximal right segments) and density (N/mm²; male SHR = 7048 ± 537; female SHR = 10355 ± 359; male WKY = 9457 ± 1437; female WKY = 14351 ± 1448) for proximal right segments) were significantly larger in females of both groups and remarkably larger in WKY than SHR for both genders. Strain and gender differences in phrenic nerve myelinated fiber number are described for the first time in this experimental model of hypertension, indicating the need for thorough functional studies of this nerve in male and female SHR

Static Hopfions in the extended Skyrme-Faddeev model

We construct static soliton solutions with non-zero Hopf topological charges to a theory which is an extension of the Skyrme-Faddeev model by the addition of a further quartic term in derivatives. We use an axially symmetric ansatz based on toroidal coordinates, and solve the resulting two coupled non-linear partial differential equations in two variables by a successive over-relaxation (SOR) method. We construct numerical solutions with Hopf charge up to four, and calculate their analytical behavior in some limiting cases. The solutions present an interesting behavior under the changes of a special combination of the coupling constants of the quartic terms. Their energies and sizes tend to zero as that combination approaches a particular special value. We calculate the equivalent of the Vakulenko and Kapitanskii energy bound for the theory and find that it vanishes at that same special value of the coupling constants. In addition, the model presents an integrable sector with an infinite number of local conserved currents which apparently are not related to symmetries of the action. In the intersection of those two special sectors the theory possesses exact vortex solutions (static and time dependent) which were constructed in a previous paper by one of the authors. It is believed that such model describes some aspects of the low energy limit of the pure SU(2) Yang-Mills theory, and our results may be important in identifying important structures in that strong coupling regime.Comment: 22 pages, 42 figures, minor correction

SW England Rare Earth Elements (REE) Stream Sediment Dataset user guide

This report describes how 3378 stream sediment samples collected between 2002 and 2013 across SW England by the BGS G-BASE project were analysed to determine the total concentration of 16 rare earth elements (REE)by inductively-coupled mass spectrometry (ICP-MS) and x-ray fluorescence spectrometry (XRFS). It documents the methods used to process and display the resultant chemical data. The analytical results were used to create a series of raster (ASCII format) grids and interpolated geochemical maps (PNG images) showing the distribution of REE across SW England

Stream Fish Fauna From The Tributaries Of The Upper Itapetininga River, Upper Paranapanema River Basin, State Of São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)The study area, which is located in urban and rural areas within the upper Paranapanema River basin, is undergoing several types of anthropogenic and non-anthropogenic impacts, such as chemical alterations, habitat disruption, and biological invasions. The aim of this study is to describe the fish faunal composition from tributaries of the Itapetininga River, upper Paranapanema River basin, state of São Paulo, Brazil. Herein, we include a list of 49 fish species, belonging to seven orders, 19 families and 35 genera, captured from September 2009 to November 2013. Thus, the present study fills part of the knowledge gap about the fish fauna from tributaries of the Paranapanema basin by adding data from small tributaries not studied so far. Moreover, our findings can help inform future conservational and/or management strategies within the upper Paranapanema basin. © 2016 Check List and Authors.12207/50981-7, FAPESP, Fundação de Amparo à Pesquisa do Estado de São Paulo07/50982-3, FAPESP, Fundação de Amparo à Pesquisa do Estado de São Paulo2012/09346-4, FAPESP, Fundação de Amparo à Pesquisa do Estado de São PauloFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP

Cognitive approaches and optical multispectral data for semi-automated classification of landforms in a rugged mountainous area

This paper introduces a new open source, knowledge-based framework for automatic interpretation of remote sensing images, called InterIMAGE. This framework owns a flexible modular architecture, in which image processing operators can be associated to both root and leaf nodes of the semantic network, which constitutes a differential strategy in comparison to other object-based image analysis platforms currently available. The architecture, main features as well as an overview on the interpretation strategy implemented in InterIMAGE is presented. The paper also reports an experiment on the classification of landforms. Different geomorphometric and textural attributes obtained from ASTER/Terra images were combined with fuzzy logic and drove the interpretation semantic network. Object-based statistical agreement indices, estimated from a comparison between the classified scene and a reference map, were used to assess the classification accuracy. The InterIMAGE interpretation strategy yielded a classification result with strong agreement and proved to be effective for the extraction of landforms

MUMAL: multivariate analysis in shotgun proteomics using machine learning techniques.

BACKGROUND: The shotgun strategy (liquid chromatography coupled with tandem mass spectrometry) is widely applied for identification of proteins in complex mixtures. This method gives rise to thousands of spectra in a single run, which are interpreted by computational tools. Such tools normally use a protein database from which peptide sequences are extracted for matching with experimentally derived mass spectral data. After the database search, the correctness of obtained peptide-spectrum matches (PSMs) needs to be evaluated also by algorithms, as a manual curation of these huge datasets would be impractical. The target-decoy database strategy is largely used to perform spectrum evaluation. Nonetheless, this method has been applied without considering sensitivity, i.e., only error estimation is taken into account. A recently proposed method termed MUDE treats the target-decoy analysis as an optimization problem, where sensitivity is maximized. This method demonstrates a significant increase in the retrieved number of PSMs for a fixed error rate. However, the MUDE model is constructed in such a way that linear decision boundaries are established to separate correct from incorrect PSMs. Besides, the described heuristic for solving the optimization problem has to be executed many times to achieve a significant augmentation in sensitivity. RESULTS: Here, we propose a new method, termed MUMAL, for PSM assessment that is based on machine learning techniques. Our method can establish nonlinear decision boundaries, leading to a higher chance to retrieve more true positives. Furthermore, we need few iterations to achieve high sensitivities, strikingly shortening the running time of the whole process. Experiments show that our method achieves a considerably higher number of PSMs compared with standard tools such as MUDE, PeptideProphet, and typical target-decoy approaches. CONCLUSION: Our approach not only enhances the computational performance, and thus the turn around time of MS-based experiments in proteomics, but also improves the information content with benefits of a higher proteome coverage. This improvement, for instance, increases the chance to identify important drug targets or biomarkers for drug development or molecular diagnostics

Effect of raw sugar cane bagasse on performance and ingestive behavior of beef cattle

Avaliou-se o efeito da utilização do bagaço de cana-de-açúcar in natura (BIN), obtido por dois métodos de extração do açúcar, moagem convencional ou difusão, como fonte de fibra em dietas que continham bagaço tratado sob pressão e vapor (BTPV), como principal fonte de volumoso sobre o desempenho e o comportamento ingestivo de bovinos confinados. Para avaliação do desempenho, foram utilizados 84 machos não castrados das raças Nelore, Canchim e Holandesa, com média de peso inicial de 270kg, distribuídos em delineamento de blocos ao acaso. Para a avaliação do comportamento ingestivo, foram utilizados quatro garrotes da raça Nelore, em delineamento de quadrado latino 4 x 4. Os tratamentos consistiram na substituição do BTPV pelo BIN na matéria seca, constituindo as dietas experimentais: 5% BIN moagem convencional; 5% BIN difusão, 10% BIN difusão e 15% BIN difusão. O consumo de MS foi menor no tratamento com 15% de BIN obtido por difusão (BINdif), em relação ao teor de inclusão de 10%. Não houve diferença (P>0,05) entre os tratamentos para ganho diário de peso, conversão alimentar e peso vivo final entre os tratamentos. Os tempos despendidos com as atividades de ruminação (minutos/kg de MS) e mastigação (minutos/kg de MS ou de FDN) foram maiores (P<0,05) no tratamento com 15% de BINdif na dieta. O BINdif pode ser utilizado como fonte de fibra íntegra em até 15% da MS da dieta sem prejudicar o desempenho dos animais.This study was conducted to evaluate effects of replacing steam pressure treated sugar cane bagasse by two types of raw sugar cane bagasse extracted through grinding or diffusion, on performance and ingestive behavior of beef cattle. Eighty four young bulls (Nelore, Canchim and Holstein) with 270kg of body weight at the beginning of the experiment were used in a randomized block design. Ingestive behavior was evaluated using four Nelore young bulls in a 4 x 4 Latin square design. Treatments were the direct substitution of steam pressure treated sugarcane bagasse by raw bagasse (RB), corresponding to the experimental treatments: 5% RB from grinding; 5% RB from diffusion; 10% RB from diffusion and 15% RB from diffusion. Dry matter intake was lower in treatment with 15% of bagasse obtained by diffusion (BINdif) in comparison to 10% BINdif. There were no differences (P>0.05) among treatments for average daily gain, feed conversion and final live weight. Ruminating time (minutes/kg of DM) and chewing time (minutes/kg of DM or NDF) was greater (P>0.05) when BINdif was added at 15% level to diets. BINdif can be added up to 15% of the dietary DM with no detrimental effect on beef cattle performance

Growth, feed intake, carcass characteristics, and meat fatty acid profile of lambs fed soybean oil partially replaced by fish oil blend

AbstractThe objective of this study was to evaluate the effects of partial replacement of soybean oil by fish oil on dry matter intake (DMI), growth, carcass characteristics, and meat fatty acid profile of feedlot lambs. Fifty Santa Ines male lambs with 17.1±2.8 of initial body weight (BW) were individually penned and used in a randomized complete block design with 10 blocks and 5 treatments. Dietary treatments, dry matter (DM) basis, consisted of: (1) control diet (CONT) with a 10:90 of forage to concentrate ratio, (2) control diet supplemented with 40g/kg of soybean oil (0FO), (3) control diet supplemented with 2.5g/kg of fish oil blend+37.5g/kg of soybean oil (25FO), (4) control diet supplemented with 5g/kg of fish oil blend+35g/kg of soybean oil (50FO), and (5) control diet supplemented with 7.5g/kg of fish oil blend+32.5g/kg of soybean oil (75FO). Diets were mixed once daily and fed ad libitum. At the end of the 84-day feeding trial, all animals were slaughtered for carcass characteristics evaluations and meat fat acid profile determination. Animals fed soybean oil had reduced DMI compared to control; however, the average daily gain (ADG), feed efficiency (FE) and final BW were not affected. The animals fed fish oil had similar DMI, ADG, FE and final BW to those receiving the control treatment. The DMI, ADG, FE and final BW were not affected by the increasing substitution of soybean oil for fish oil. Most carcass characteristics were not affected by treatments. The shrink after chilling was lower for the 50FO diet. Short, medium, and long-chain fatty acids were similar for all diets. Stearic acid concentration was higher for lambs fed the fat diets vs. control. However, stearic acid concentration decreased linearly when fish oil replaced soybean oil. Vaccenic acid concentration was higher for lambs fed fat diets vs. control. In addition, vaccenic acid increased linearly with fish oil inclusion. The conjugated linoleic acid (CLA) C18:2 cis-9, trans-11 showed higher concentration in meat of animals fed diets containing fish oil compared to control, but it was not affected by soybean oil inclusion. Feeding small amounts of fish oil blend plus soybean oil does not exert an additional effect on the concentration of CLA C18:2 cis-9, trans-11 in relation to the exclusive use of soybean oil. However, the mixture of 7.5g/kg DM of fish oil blend with 32.5g/kg DM of soybean oil is recommended, because it improves the lipid profile of the meat by increasing the concentration of vaccenic acid, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). Additionally, supplementing 7.5g/kg DM of fish oil blend mixed with 32.5g/kg DM of soybean had no negative effect on the feed intake, ADG, FE and carcass characteristics of the lambs fed high concentrate diet

Comparative Evaluation Of Conventional Rt-pcr And Real-time Rt-pcr (rrt-pcr) For Detection Of Avian Metapneumovirus Subtype A [comparação Entre As Técnicas De Rt-pcr Convencional E Rt-pcr Em Tempo Real Para A Detecção Do Metapneumovírus Aviários Subtipo A]

Avian metapneumovirus (AMPV) belongs to Metapneumovirus genus of Paramyxoviridae family. Virus isolation, serology, and detection of genomic RNA are used as diagnostic methods for AMPV. The aim of the present study was to compare the detection of six subgroup A AMPV isolates (AMPV/A) viral RNA by using different conventional and real time RT-PCR methods. Two new RT-PCR tests and two real time RT-PCR tests, both detecting fusion (F) gene and nucleocapsid (N) gene were compared with an established test for the attachment (G) gene. All the RT-PCR tested assays were able to detect the AMPV/A. The lower detection limits were observed using the N-, F- based RRT-PCR and F-based conventional RT-PCR (10 0.3 to 10 1 TCID 50 mL -1). The present study suggests that the conventional F-based RT-PCR presented similar detection limit when compared to N- and F-based RRT-PCR and they can be successfully used for AMPV/A detection.39514451451Arns, C.W., Hafez, M.H., (1992) Swollen Head Syndrome in Poultry Flocks in Brazil, pp. 81-84. , In: WESTERN POULTRY DISEASE CONFERENCE, 41., 1992, Sacramento, USA. Proceedings... 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Insights into the effects of mucosal epithelial and innate immune dysfunction in older people on host interactions with Streptococcus pneumoniae

In humans, nasopharyngeal carriage of Streptococcus pneumoniae is common and although primarily asymptomatic, is a pre-requisite for pneumonia and invasive pneumococcal disease (IPD). Together, these kill over 500,000 people over the age of 70 years worldwide every year. Pneumococcal conjugate vaccines have been largely successful in reducing IPD in young children and have had considerable indirect impact in protection of older people in industrialized country settings (herd immunity). However, serotype replacement continues to threaten vulnerable populations, particularly older people in whom direct vaccine efficacy is reduced. The early control of pneumococcal colonization at the mucosal surface is mediated through a complex array of epithelial and innate immune cell interactions. Older people often display a state of chronic inflammation, which is associated with an increased mortality risk and has been termed 'Inflammageing'. In this review, we discuss the contribution of an altered microbiome, the impact of inflammageing on human epithelial and innate immunity to S. pneumoniae, and how the resulting dysregulation may affect the outcome of pneumococcal infection in older individuals. We describe the impact of the pneumococcal vaccine and highlight potential research approaches which may improve our understanding of respiratory mucosal immunity during pneumococcal colonization in older individuals.Host-parasite interactio